Pinned Repositories
ancestry_pipeline
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
atom
The hackable text editor
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
BD2K-Summer-Workshop
Teaching the fundamentals of bioinformatics and data science. BD2K Summer Workshop 2016
Bios8366
Advanced Statistical Computing at Vanderbilt University's Department of Biostatistics
BME205_HW4
This is the description file for Kevin Karplus' BME205 class
dockerfiles
hydra
jpfeil's Repositories
jpfeil/dockerfiles
jpfeil/ancestry_pipeline
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
jpfeil/atom
The hackable text editor
jpfeil/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
jpfeil/BD2K-Summer-Workshop
Teaching the fundamentals of bioinformatics and data science. BD2K Summer Workshop 2016
jpfeil/BME205_HW4
This is the description file for Kevin Karplus' BME205 class
jpfeil/bowtie
An ultrafast memory-efficient short read aligner
jpfeil/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
jpfeil/cgcloud
Image and VM management for Jenkins, Spark and Mesos clusters in EC2
jpfeil/cgl-docker-lib
jpfeil/diamond
Accelerated BLAST compatible local sequence aligner.
jpfeil/fusion
jpfeil/fusionFrameFinder
jpfeil/FusionInspector
FusionInspector code
jpfeil/GATK-Whole-Genome-Pipeline
End to end pipeline for calling variants against an entire genome
jpfeil/gbgfa
Gene-wise Prior Bayesian Group Factor Analysis Model
jpfeil/germline-validation
jpfeil/IntegrativeAnalysis
R code for integrative genomic data analysis
jpfeil/Learn-C-The-Hard-Way-Exercise
jpfeil/marginAlign
UCSC Nanopore
jpfeil/ml-learn
jpfeil/poretools
a toolkit for working with Oxford nanopore data
jpfeil/protect
jpfeil/qsmooth
Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
jpfeil/surpi
SURPI
jpfeil/tmr_search
Transcriptional Master Regulator search in Cancer, a pipeline using MARINa
jpfeil/toil-lib
A common library for functions and tools used in toil-based pipelines
jpfeil/toil-scripts
A collection of scripts that use Toil to implement genomics pipelines
jpfeil/UCSC_VIPER
The UCSC version of the VIPER package for bioinformatics and systems biology
jpfeil/wglasso
Gene Network Reconstruction by Integration of Prior Biological Knowledge.