jphill01
Bioinformatician, data scientist and Postdoc in Integrative Biology. Developing computational, mathematical and statistical methods for DNA barcoding
University of Guelph
Pinned Repositories
Barcode-Gap-Bootstrap
Bayesian-DNA-Barcode-Gap-Coalescent
Catch-the-Ace
A simplified R implementation of Catch the Ace
CV
DNA-Barcode-Gap-Coalescent
HACSim-RShiny-App
HACSim-RShiny-App-Template
HACSim-Simulation-Study
HACSim.R
Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.
jphill01.github.io
jphill01's Repositories
jphill01/Barcode-Gap-Bootstrap
jphill01/Bayesian-DNA-Barcode-Gap-Coalescent
jphill01/Catch-the-Ace
A simplified R implementation of Catch the Ace
jphill01/CV
jphill01/DNA-Barcode-Gap-Coalescent
jphill01/HACSim-RShiny-App
jphill01/HACSim-RShiny-App-Template
jphill01/HACSim-Simulation-Study
jphill01/HACSim.R
Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.
jphill01/jphill01.github.io
jphill01/LANDMark
Implementation of a decision tree ensemble which splits each node using learned linear and non-linear functions.
jphill01/MACER
Molecular Acquisition, Cleaning, and Evaluation in R (MACER) is an R package to assist biological researchers in assembling taxonomically and marker focused molecular sequence data set. MACER accepts a list of genera as a user input and uses NCBI-GenBank and BOLD as resources to download and assemble molecular sequence datasets. These datasets are then assembled by marker, aligned, trimmed, and cleaned. The use of this package allows the publication of specific parameters to ensure reproducibility. The MACER package has four core functions.
jphill01/MACER_example
Example walk through for the MACER pacakge located at rgyoung6/MACER.
jphill01/My-Scripts
jphill01/PhD-Thesis-Appendix
jphill01/PhD.-Thesis
jphill01/VLF-Analysis
jphill01/VLF.R