Pinned Repositories
CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
countland
tools in python and R for analyzing biological count data, especially from single cell RNAseq
cugraph
cuGraph - RAPIDS Graph Analytics Library
infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
scanpy
Single-cell analysis in Python. Scales to >1M cells.
scUTRquant
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
unicode-math
Package for using unicode/OpenType maths fonts in XeLaTeX & LuaLaTeX
cugraph
cuGraph - RAPIDS Graph Analytics Library
scanpy
Single-cell analysis in Python. Scales to >1M cells.
jpintar's Repositories
jpintar/CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
jpintar/countland
tools in python and R for analyzing biological count data, especially from single cell RNAseq
jpintar/cugraph
cuGraph - RAPIDS Graph Analytics Library
jpintar/infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
jpintar/rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
jpintar/scanpy
Single-cell analysis in Python. Scales to >1M cells.
jpintar/scUTRquant
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
jpintar/unicode-math
Package for using unicode/OpenType maths fonts in XeLaTeX & LuaLaTeX