/CoronaWatchNL

RIVM reported numbers on the Coronavirus outbreak in The Netherlands

Primary LanguageJupyter Notebook

corona_artwork.jpg

Dataset: COVID-19 case counts in The Netherlands

Data changes by RIVM - 31 March 2020 #44

CoronaWatchNL collects COVID-19 disease count cases in The Netherlands. Numbers are collected from the RIVM (National Institute for Public Health and the Environment) website on a daily basis. This project standardizes, and publishes data and makes it Findable, Accessible, Interoperable, and Reusable (FAIR). We aim to collect a complete time series and prepare a dataset for reproducible analysis and academic use.

Dutch:

CoronalWatchNL verzamelt ziektecijfers over COVID-19 in Nederland. Dagelijks worden de cijfers verzameld van de website van het RIVM. Dit project standaardiseert en publiceert de gegevens en maakt ze vindbaar, toegankelijk, interoperabel en herbruikbaar (FAIR). We streven ernaar om een dataset beschikbaar te stellen voor reproduceerbare analyses en wetenschappelijk gebruik.

Datasets

The following datasets are available for reuse. Daily updates

Dataset Source Variables
COVID-19 reported case counts by date in NL RIVM Date, Type (Total, hopitalized and deceased patients), Count (the reported numbers for that day)
COVID-19 case counts by date in NL (NEW) RIVM Date, Type (Total, hopitalized and deceased patients), Count (the actual numbers for that day)
COVID-19 case counts in NL per province RIVM Date, Province, COVID-19 case counts
COVID-19 hospitalizations in NL per municipality RIVM Date, Number of COVID-19 hospitalized patients in NL, Municipality of residence, Municipality code (2019), Province
COVID-19 case counts in NL per age RIVM Date, Age group, Type, Number of positive COVID-19 disease cases in NL
COVID-19 case counts in NL per gender RIVM Date, Gender group, Type, Number of positive COVID-19 disease cases in NL
COVID-19 tests in NL by date (NEW) RIVM Publication Date, Date, Included labs, Type (Total and positive tests), Number of tests
COVID-19 per municipality (PDF maps) RIVM Date, Type, Number of positive COVID-19 disease cases, hospitalizations and fatalities per 100.000 people, Municipality, Province
RIVM press releases RIVM Date and Time, Content of press release
COVID-19 intensive care patient counts in NL (EXPERIMENTAL) Stichting NICE Date, New intake of positive IC patients, Total of positive patients currently in IC, Total of positive patients ever in IC, Total of ICUs with currently at least one positive patient, Total of fatal IC cases, Total of survived IC cases

Deprecated (pending)

The following datasets are awaiting deprecation. They are replaced by new datasets.

Dataset URL Source Variables Alternative
COVID-19 disease case counts in NL RIVM Date, Number of positive COVID-19 disease cases in NL rivm_NL_covid19_national.csv COVID-19 case counts in NL
COVID-19 fatalities in NL RIVM Date, Number of COVID-19 fatalities in NL rivm_NL_covid19_national.csv COVID-19 case counts in NL
COVID-19 hospitalizations in NL RIVM Date, Number of COVID-19 hospitalized patients in NL rivm_NL_covid19_national.csv COVID-19 case counts in NL

Inactive

The following datasets are no longer appended with new data (because RIVM is no longer providing the data).

Dataset URL Source Variables Expire date
COVID-19 disease case counts in NL [long format] [wide format] RIVM Date, Number of positive COVID-19 disease cases in NL, Municipality of residence, Municipality code (2019), Province 2020-03-30

Raw data

CoronaWatchNL collects copies of the raw data such that data collection is verifiable. Copies of the collected data can be found in the folder raw_data/. The data isn't standardised.

Data collection sources

The following sources are used for data collection.

Source Institute Collected variables
https://www.rivm.nl/nieuws/actuele-informatie-over-coronavirus RIVM Positively tested patients, Fatalities (total), Hospitalized (total)
https://www.rivm.nl/coronavirus-kaart-van-nederland-per-gemeente RIVM Positive tests per municipality
https://www.rivm.nl/nieuws/actuele-informatie-over-coronavirus/data RIVM Epidemiological reports
https://www.stichting-nice.nl/ Stichting NICE Postively tested patients admitted to IC, Number of ICUs with positively tested patient(s), Number of fatal IC cases, Number of survived IC cases

Remarks

Since 3 March 2020, RIVM reports the number of diagnoses with the coronavirus and their municipality of residence on a daily base. The data contains the total number of positively tested patients. It is not a dataset with the current number of sick people in the Netherlands. The RIVM does not currently provide data on people who have been cured.

Graphs

The following graphs visualize the development of the COVID-19 disease outbreak. The underlying data can be found in the data folder. The graphs can be found in the plots folder. See the license section for information about sharing the graphs.

Descriptive

Click here for a subpage with all descriptive plots

Maps

Click here for a subpage with all maps

Map plots

Forecast

Click here fore a subpage with all forecasts

Interesting links

License and academic use

The graphs and data are licensed CC0. The original data is copyright RIVM.

For academic use, use presistent data from DOI. This is a persistent copy of the data. Version number refer to the date. Please cite:

De Bruin, J. (2020). Number of diagnoses with coronavirus disease (COVID-19) in The Netherlands (Version v2020.3.15) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.3711575

Image from iXimus via Pixabay

CoronaWatchNL

CoronaWatchNL is collective of researchers and volunteers in The Netherlands. We aim to make the reported number on COVID-19 disease in The Netherlands FAIR.

Help on this project is appreciated. We are looking for new datasets, data updates, graphs and maps. Please report issues in the Issue Tracker. Want to contribute? Please check out the help wanted tag in the Issue Tracker.

Please send an email to jonathandebruinos@gmail.com