Pinned Repositories
dryclean-dev
Irons out wrinkles in noisy coverage data using robust PCA
fragCounter
GC and mappability corrected fragment coverage for paired end whole genome sequencing
gatk
Official code repository for GATK versions 4 and up
gGnome_dev
R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
gTrack
R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
homeology
JaBbA_dev
MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
loose_ends_2023
skilift-dev
An R interface for loading and modifying PGV datafiles
SNVplicity.dev
jrafailov's Repositories
jrafailov/dryclean-dev
Irons out wrinkles in noisy coverage data using robust PCA
jrafailov/fragCounter
GC and mappability corrected fragment coverage for paired end whole genome sequencing
jrafailov/gatk
Official code repository for GATK versions 4 and up
jrafailov/gGnome_dev
R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
jrafailov/gTrack
R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
jrafailov/homeology
jrafailov/JaBbA_dev
MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
jrafailov/loose_ends_2023
jrafailov/skilift-dev
An R interface for loading and modifying PGV datafiles
jrafailov/skitools
General purpose mskilab R tools
jrafailov/SNVplicity.dev
jrafailov/zitools
assorted slightly useful mskilab utils