/functional-tools-analysis

Comparative survey of metaproteomics tools (i.e., eggNOG-mapper, MetaGOmics, MEGAN, MetaProteomeAnalyzer, Prophane, Unipept).

Primary LanguageHTMLMIT LicenseMIT

Survey of metaproteomics software tools for functional microbiome analysis

R. Sajulga, C. Easterly, M. Riffle, B. Mesuere, T. Muth, S. Mehta, P. Kumar, J. Johnson, B. Gruening, H. Schiebenhoefer, C. A. Kolmeder, S. Fuchs, B. L. Nunn, J. Rudney, T. J. Griffin, P. D. Jagtap

This repository details the analysis performed for the functional tools survey manuscript.

To replicate this analysis, download the input data files on Zenodo and run through the R markdown notebooks (func_tools_analysis.Rmd) via a software such as RStudio (v1.2 or greater).