jrussell25
Grad student in applied physics in the @Hekstra-Lab. Doing microscopy and writing code to analyze images.
Pinned Repositories
microutil
Python utils for working microscopy datasets
adjoint_method
Use the adjoint method and gradient descent to find the parameters of an ODE
aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python
colony_counter
Count colonies on scanned agar plates. Example image included.
CS205-ADMM
Group 17 final project for Harvard CS 205, Spring 2020.
dask-regionprops
Calculate labelled region properties with dask delayed and dataframe
davy-jones
Python API for controlling the Insight DeepSee Lasers for automated microscopy experiments
mpl-interactions
Sliders to control matplotlib and other interactive goodies. Works in any interactive backend and even uses ipywidgets when in a Jupyter notebook
scratch-former
Building a gpt-like language model from "scratch"
srs-tools
Code for analysis of SRS experiments
jrussell25's Repositories
jrussell25/dask-regionprops
Calculate labelled region properties with dask delayed and dataframe
jrussell25/adjoint_method
Use the adjoint method and gradient descent to find the parameters of an ODE
jrussell25/colony_counter
Count colonies on scanned agar plates. Example image included.
jrussell25/CS205-ADMM
Group 17 final project for Harvard CS 205, Spring 2020.
jrussell25/davy-jones
Python API for controlling the Insight DeepSee Lasers for automated microscopy experiments
jrussell25/intermediate-python
Python lessons focusing on numpy and the scientific python stack for Qbio REU students.
jrussell25/jrussell25.github.io
jrussell25/qbio-python
Materials for python workshops for Harvard QBio REU students
jrussell25/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python
jrussell25/mpl-interactions
Sliders to control matplotlib and other interactive goodies. Works in any interactive backend and even uses ipywidgets when in a Jupyter notebook
jrussell25/scratch-former
Building a gpt-like language model from "scratch"
jrussell25/srs-tools
Code for analysis of SRS experiments
jrussell25/BayesianTracker
Bayesian multi-object tracking
jrussell25/cartography
Making maps in python
jrussell25/data-sharing
Datasets from my work that I wanted to be publicly accessible.
jrussell25/ML-miscellany
jrussell25/numerical_pde
My solutions to some exercises in numerically solving PDE.
jrussell25/pyrepo-cookiecutter
personal repo bootstrap
jrussell25/xr-single-cell
Xarray accessor for quantifying single-cell ROIs
jrussell25/YeaZ-GUI
An interactive tool for segmenting yeast cells using deep learning.