js134711

js134711's Stars

• alfonsosaera/myManhattan

  R function to generate Manhattan plots using ggplot

  Language:R83

• stephenslab/finemap

  Demos of SuSiE and FINEMAP.

  21

• filiaultd/haplotype.plots

  Generate haplotype plots for candidate gene regions using fastPHASE

  Language:R2

• ilarsf/gwasTools

  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)

  Language:R307

• shbrainard/linkage-disequilibrium

  R functions to visualize r2 values

  Language:R2

• CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

  aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

  Language:Jupyter Notebook27.1k7.9k

• chendaniely/pandas_for_everyone

  Repository to accompany "Pandas for Everyone"

  Language:Jupyter Notebook400405

• plotrix/plotrix

  Lots of plots, various labeling, axis and color scaling functions.

  Language:R114

• balban/Books

  220

• NVIDIA-Genomics-Research/GEPSi

  GEPSi simulates phenotypes for GWAS data based on a range of conditions and biological assumptions.

  Language:Python128

• epigen/dea_limma

  A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

  Language:R242

• stop-pre16/mcmseq

  mcmseq

  Language:C++51

• ccs-amsterdam/r-course-material

  A collection of R tutorials

  Language:HTML19386

• drjingma/NetGSAreview

  A comparative study of network-based pathway enrichment analysis methods

  Language:HTML1

• douglasadamoski/TNBC-Targeting

  Guanylate-binding protein-1 is a potential new therapeutic target for triple negative breast cancer

  Language:R1

• avehtari/BDA_R_demos

  Bayesian Data Analysis demos for R

  Language:HTML569206

• hally166/R_flowcytometry_course

  The files and presentation from the Cytometry Core Facility flow cytometry data analysis course in R

  Language:R215

• genomicsclass/labs

  Rmd source files for the HarvardX series PH525x

  Language:R2k2k

• briatte/awesome-network-analysis

  A curated list of awesome network analysis resources.

  Language:R3.6k610

• briatte/dsr

  Introduction to Data Science with R (Sciences Po, Paris, 2023)

  Language:R4410

• tohweizhong/pdf-dump

  A dump of all the data science materials (mostly pdf's) that I have accumulated over the years

  331166

• LukeMoraglia/ISLR_datasets

  Datasets included with the ISLR2 R package

  Language:R1

• keithlohse/mixed_effects_models

  Resources for creating mixed-effects models as analogues for ANOVA and for truly longitudinal models.

  Language:HTML153

• proback/BeyondMLR

  Repo for January 2021 version of Beyond Multiple Linear Regression: Applied Generalized Linear Models and Multilevel Models in R. The rendered version can be found at: https://bookdown.org/roback/bookdown-BeyondMLR/

  Language:TeX169137

• ourcodingclub/CC-MCMCglmm-MA

  Resources needed to complete the MCMCglmm for meta-analysis tutorial

  Language:R86