Pinned Repositories
aerial.utils
Various utility functionality covering common tasks; trees; clustering; graphs; probability, stats, and information theory, et.al.
aerobio
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
DMM
Data Flow Matrix Machines. Generalization of recurrent neural networks.
gaisr
Genomic Analysis Illuminating Structured RNA
hanami
Interactive arts and charts plotting with Clojure(Script) and Vega-lite / Vega. Flower viewing 花見 (hanami)
hanasu
A very light weight, simple websocket based messaging system in Clojure(Script). Converse/talk 話す(hanasu).
JS-Binary-VCF-Tabix
JavaScript BGZF VCF and binary Tabix readers
js-local-bam
Javascript local BAM and BAI index file parsing and processing
js-local-vcf
Javascript local VCF and Tabix index file parsing and processing
saite
Interactive document creation for exploratory graphics and visualizations. 咲いて (in bloom). Built on top of hanami vega/vega-lite library with CodeMirror and self hosted ClojureScript
jsa-aerial's Repositories
jsa-aerial/hanami
Interactive arts and charts plotting with Clojure(Script) and Vega-lite / Vega. Flower viewing 花見 (hanami)
jsa-aerial/saite
Interactive document creation for exploratory graphics and visualizations. 咲いて (in bloom). Built on top of hanami vega/vega-lite library with CodeMirror and self hosted ClojureScript
jsa-aerial/hanasu
A very light weight, simple websocket based messaging system in Clojure(Script). Converse/talk 話す(hanasu).
jsa-aerial/DMM
Data Flow Matrix Machines. Generalization of recurrent neural networks.
jsa-aerial/aerobio
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
jsa-aerial/aerial.utils
Various utility functionality covering common tasks; trees; clustering; graphs; probability, stats, and information theory, et.al.
jsa-aerial/gaisr
Genomic Analysis Illuminating Structured RNA
jsa-aerial/js-local-bam
Javascript local BAM and BAI index file parsing and processing
jsa-aerial/js-local-vcf
Javascript local VCF and Tabix index file parsing and processing
jsa-aerial/bbhanami
Bare Bones example Hanami client/server app
jsa-aerial/jsbgzf
Javascript bgzf inflation and deflation
jsa-aerial/aerial.bio.utils
Various bioinformatic general utility tools for unified file reading, sequence xform, sequence entropy information processing , et.al.
jsa-aerial/aerosaite
Saite delivered as self installing / running uberjar
jsa-aerial/clj-iobio
A robust, flexible, full program DAG, declarative tool definition, extensible toolset iobio server in Clojure. With function nodes, streaming and non streaming flow, dynamic caching, logging, and superior error handling.
jsa-aerial/msgpacket
Client<->Server/Peer<->Peer message protocol and implementations
jsa-aerial/pyhanasu
Hanasu for Python
jsa-aerial/aerial.fs
General file system utility functions (eg, dodir cpfiles, generalized move, etc). Extended from an original work of Miki Tebeka
jsa-aerial/aeroviews
Instrumented interactive visulizations for Aerobio sequencer data analyses
jsa-aerial/bam.iobio.io
http://bam.iobio.io
jsa-aerial/cljs-adventures
Various experiments using all manner of ClojureScript stuff (re-com, reagent, reframe, quil, etc)
jsa-aerial/js-bv-common
Javascript common functionality across tabix and bai index file processing
jsa-aerial/js-bv-sampling
Javascript read depth and random sampling on bai (bam) and tba (vcf/tabix) index file and binary readers
jsa-aerial/jsa-aerial.github.io
jsa-aerial/md-to-hiccup
Convert markdown to hiccup in one pass
jsa-aerial/packages
Javascript libraries packaged up with Google Closure externs
jsa-aerial/panclus
Pangenome clustering using entropy, relative entropy, cumulative RE, hybrid distributions, et.al
jsa-aerial/SeqSim
An approach to various sequence (genes, amplicons, ncRNA, et. al) similarity via informed embeddings, matrices, and LA
jsa-aerial/TTSfinder
Determine true transcription termination sites from Term-Seq data using ancillary RNA-Seq data
jsa-aerial/vega-lite
A concise grammar of interactive graphics, built on Vega.
jsa-aerial/word2vec-clj
word2vec in clj by way of medallia/Word2VecJava