jsacco1
Bioinformatician | Single Cell Analysis | Machine Learning | CRISPR | Functional Genomics | Contributor to @ucsf-lgr
Laboratory for Genomics Research UCSF-Berkeley-GSKSan Francisco, CA, USA
Pinned Repositories
algorithms
Minimal examples of data structures and algorithms in Python
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
awesome-competitive-programming
:gem: A curated list of awesome Competitive Programming, Algorithm and Data Structure resources
CRISPRiaDesign
guideseq
Analysis pipeline for the GUIDE-seq assay. For news, see:
Hail
Analyze 1000 Genomes VCF with Hail platform
Python-bioinformatics
Python scripts that do not need their own repo. Topics: BLAST parse, GDC query, sequence analysis
R-bioinformatics
population genetics and bioinformatics R scripts
utils
useful scripts/commands
vcf_annotate
Parse a VCF (v4.1) file; ExAC annotations (Python)
jsacco1's Repositories
jsacco1/guideseq
Analysis pipeline for the GUIDE-seq assay. For news, see:
jsacco1/algorithms
Minimal examples of data structures and algorithms in Python
jsacco1/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
jsacco1/awesome-competitive-programming
:gem: A curated list of awesome Competitive Programming, Algorithm and Data Structure resources
jsacco1/awesome-github-profile-readme
😎 A curated list of awesome GitHub Profile READMEs 📝
jsacco1/awesome-R
A curated list of awesome R packages, frameworks and software.
jsacco1/awesome-readme
A curated list of awesome READMEs
jsacco1/awesome-shell
A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.
jsacco1/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
jsacco1/awesome-statistics
A curated list of awesome statistics resources
jsacco1/awesome-tmux
A list of awesome resources for tmux
jsacco1/bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
jsacco1/catalyst
Accelerated deep learning R&D
jsacco1/crispresso
scripts for crispresso analysis
jsacco1/free-programming-books
:books: Freely available programming books
jsacco1/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
jsacco1/Hands-on-Algorithmic-Problem-Solving
A middle-to-high level algorithm book designed with coding interview at heart!
jsacco1/jsacco1.github.io
Bioinformatics Portfolio
jsacco1/kedro-viz
Visualise your Kedro data pipelines.
jsacco1/learning-resource-links
An awesome list of learning resources for bioinformatics, genomics and computational biology
jsacco1/python-cheatsheet
Comprehensive Python Cheatsheet
jsacco1/reverse-interview
Questions to ask the company during your interview
jsacco1/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
jsacco1/Sorting-Algorithms-Visualizer
Program made with Python and Pygame module for visualizing sorting algorithms
jsacco1/TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.
jsacco1/utils
useful scripts/commands
jsacco1/CRISPRiaDesign
jsacco1/awesome-multi-omics
List of software packages for multi-omics analysis
jsacco1/crispr-bio
jsacco1/jsacco1