Pinned Repositories
AmpliconTools
ATAC-seq
ATAC-seq2
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
DMRfinder
Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
FlowClus
Filters and denoises pyrosequenced amplicons
Genrich
Detecting sites of genomic enrichment
harvard
MACS
MACS -- Model-based Analysis of ChIP-Seq
NGmerge
Merging paired-end reads and removing adapters
jsh58's Repositories
jsh58/Genrich
Detecting sites of genomic enrichment
jsh58/NGmerge
Merging paired-end reads and removing adapters
jsh58/DMRfinder
Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
jsh58/MACS
MACS -- Model-based Analysis of ChIP-Seq
jsh58/ATAC-seq2
jsh58/FlowClus
Filters and denoises pyrosequenced amplicons
jsh58/harvard
jsh58/ATAC-seq
jsh58/AmpliconTools
jsh58/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
jsh58/rutgers
jsh58/bioconda-recipes
Conda recipes for the bioconda channel.
jsh58/centrifuge
Classifier for metagenomic sequences
jsh58/gemini
a lightweight db framework for disease and population genetics.
jsh58/gwu
jsh58/metagen
jsh58/qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
jsh58/simulator
PCR simulator
jsh58/st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
jsh58/stitch
Merging paired-end reads
jsh58/tools-devteam
Contains a set of Galaxy Tools mostly written by the Galaxy Team.
jsh58/tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission