jtamames/SqueezeMeta

Issues

• sqm2tables.py

  #869 opened 4 months ago by mingxues2024
  9

• Stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally

  #889 opened 3 months ago by AntonioPuriel
  17

• Error when loading data for SQMtools

  #895 opened 2 months ago by RIJP-SU
  2

• COG Paths

  #894 opened a month ago by NatiTs
  9

• Duplicate row.names when using loadSQM

  #893 opened 2 months ago by SamBrutySci
  6

• SQMtools v1.6.3 incompatibility with SqueezeMeta v1.6.5

  #892 opened 2 months ago by itirg
  2

• Problems with filtering the host genome

  #891 opened 2 months ago by neokie-sun
  3

• For running specific step

  #862 opened 2 months ago by mingxues2024
  2

• Missing dependencies with Conda installation

  #883 opened 2 months ago by anthjbell
  2

• For the results from sqm2table

  #872 opened 2 months ago by mingxues2024
  2

• Metagenomics

  #877 opened 2 months ago by Imraniel
  2

• SQMtools for functional analysis

  #890 opened 2 months ago by Alexa2279
  2

• Contradictory results after sequential and coassembly modes comparison

  #888 opened 3 months ago by Selucote82
  2

• Stopping in STEP1 Died at /home/user/miniconda3/envs/squeezemeta/bin/SqueezeMeta.pl line 941

  #887 opened 3 months ago by MSJennyLee
  2

• Normalization of abundances

  #859 opened 3 months ago by inej90
  2

• running the program from data on a hardrive

  #865 opened 3 months ago by gene-pool-CY
  6

• SqueezeMeta stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally

  #867 opened 3 months ago by ankurnaqib
  3

• sqm_reads.pl appears to be stuck while running

  #866 opened 3 months ago by mycomira
  3

• stopped at step 14

  #886 opened 3 months ago by Ayush09-cmd
  6

• Error in loading SQM - version conflict

  #885 opened 3 months ago by Whitehouse2610
  4

• stop in step10

  #880 opened 3 months ago by mingxues2024
  7

• --restart is not running

  #882 opened 3 months ago by AntonioPuriel
  16

• Projects cannot been loaded in SQMtools

  #884 opened 3 months ago by Selucote82
  3

• SqueezeMeta manual unavailable

  #879 opened 3 months ago by emgiles
  7

• Dereplication step after sequential mode with long reads

  #881 opened 3 months ago by Selucote82
  5

• Error: Stopping in STEP10 -> 10.mapsamples.pl. File Sample1/intermediate/10.Sample1.mapcount is empty!

  #868 opened 3 months ago by eoinoh91
  15

• Option to continue making database

  #875 opened 3 months ago by Harpreet525
  5

• died at line 969

  #874 opened 3 months ago by Biotrinf
  2

• cores and ram allocated to Squeezemeta

  #878 opened 4 months ago by Alexa2279
  2

• Died at line 941

  #876 opened 4 months ago by Selucote82
  5

• Can't open conf file

  #870 opened 4 months ago by mingxues2024
  3

• Assembly error or real contig?

  #873 opened 4 months ago by SamBrutySci
  1

• Stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally

  #871 opened 4 months ago by Ayush09-cmd
  6

• SqueezeMeta_conf.pl

  #857 opened 5 months ago by AntonioPuriel
  2

• Error Encountered in SqueezeMeta with PacBio data

  #860 opened 4 months ago by Meeenakshipari
  2

• RESTART SEQUENTIAL MODE

  #853 opened 5 months ago by EorgeKit
  9

• Ways to speed up runtime

  #850 opened 4 months ago by Vincev454
  9

• antimicrobial function SQMlite

  #851 opened 4 months ago by inej90
  2

• How to combine the results analized by 'sequential mode'

  #852 opened 4 months ago by mingxues2024
  3

• Stopping in STEP5

  #847 opened 4 months ago by guianrey
  5

• Metadata connections SQMtools

  #849 opened 6 months ago by inej90
  1

• test_install.pl: Error with minimap2 and kmer-db

  #856 opened 4 months ago by Selucote82
  6

• Issue using combineSQM

  #858 opened 4 months ago by Whitehouse2610
  2

• Taxonomy abundance from SQM object

  #854 opened 4 months ago by Vincev454
  1

• Metagenome Assembly and SqueezeMeta Configuration

  #864 opened 4 months ago by gallegobq
  2

• Stopping in STEP4 -> 04.rundiamond.pl. Program finished abnormally

  #863 opened 5 months ago by AntonioPuriel
  2

• GPU accelerated

  #861 opened 5 months ago by gene-pool-CY
  1

• metaFlye

  #855 opened 5 months ago by athavars
  6

• Problem to load SQM project

  #848 opened 6 months ago by inej90
  3

• Stopping in STEP1 -> 01.run_all_assemblies.pl. Program finished abnormally

  #846 opened 6 months ago by Shivabrahmam
  11