jtengjia

jtengjia's Stars

• RitchieLab/GWAS-QC

  Quality control steps for GWAS

  Language:Shell137

• Cloufield/gwaslab

  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

  Language:Python15025

• opain/eQTL_to_TWAS

  Methods for converting eQTL summary statistics into TWAS SNP-weights

  Language:R114

• mgimond/tukeyedar

  An R package of Tukey inspired exploratory data analysis functions

  Language:R131

• JoniColeman/gwas_scripts

  Codebook from my GWAS cookbook

  Language:R183109

• smgogarten/GWASTools

  Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis

  Language:R166

• MareesAT/GWA_tutorial

  A comprehensive tutorial about GWAS and PRS

  813324

• xiaolei-lab/rMVP

  :postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

  Language:R26569

• KosukeHamazaki/RAINBOWR

  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)

  Language:R226

• taowenmicro/EasyMicrobiomeR

  Using R language in microbiome analysis

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• probml/pml-book

  "Probabilistic Machine Learning" - a book series by Kevin Murphy

  Language:Jupyter Notebook4.9k587

• fmmattioni/deep-learning-with-r-notebooks

  R notebooks for the code samples of the book "Deep Learning with R"

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• jorvlan/open-visualizations

  Visualizations based on best open science practices.

  Language:Jupyter Notebook23725

• broadinstitute/ssGSEA2.0

  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

  Language:R23279

• XiangyunHuang/R-Tutorial

  R 语言材料

  13235

• SurajGupta/r-source

  R Source Code

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• cytoscape/cytoscape-tutorials

  Collection of modular Cytoscape tutorials for online presentation using reveal.js

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• Xinglab/rmats2sashimiplot

  Language:Python13254

• anbrooks/juncBASE

  Junction Based Analysis of Splicing Events for RNA-Seq

  Language:Python3017

• MIAOKUI/PSI

  PSI calculation script

  Language:Python44

• hbctraining/In-depth-NGS-Data-Analysis-Course

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• hbctraining/Intro-to-ChIPseq

  Intro to ChIPseq using HPC

  Language:SCSS280153

• mdozmorov/genomerunner_web

  Web version of GenomeRunner

  Language:JavaScript115

• ncbi/BAMscale

  BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

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• WeiSong-bio/jmzeng1314-5years-summarize

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• chuiqin/irGSEA

  The integration of single cell rank-based gene set enrichment analysis

  Language:R10717

• bli25/RSEM_tutorial

  A short tutorial on how to use RSEM

  13246

• crazyhottommy/ChIP-seq-analysis

  ChIP-seq analysis notes from Ming Tang

  Language:Python736294

• ENCODE-DCC/chip-seq-pipeline2

  ENCODE ChIP-seq pipeline

  Language:Python240123

• griffithlab/rnabio.org

  website for the rnaseq course

  Language:SCSS9136