jtfield
Biologist working on evolutionary relationships and genomics, primarily of disease. Currently working on efficient phylogenetic tree updating automation.
Pinned Repositories
crows_bridge
Website for Myth 2: Soulblighter metaserver
crows_bridge_metaserver
Unofficial metaserver for Myth 2
data_sci_practice
My various data science scripts
github-pages-academic-starter-kit
Get your webpage up quickly!
Intensiphy
Cron job wrapper for Extensiphy to automate the acquisition of data when updating sequence alignments.
java_projects
a repo for my basic java projects as I learn java
jtf_data_portfolio
Repo of examples of my data work and things that I can do.
jtfield.github.io
hopefully linked to my gitpage
phylo_comparison
Code associated with testing and comparing Extensiphy to other methods of alignment assembly. Used in "Rapid Alignment Updating with Extensiphy"
extensiphy
Pipeline to place taxa in a sequence alignment and phylogeny using NGS reads
jtfield's Repositories
jtfield/crows_bridge
Website for Myth 2: Soulblighter metaserver
jtfield/crows_bridge_metaserver
Unofficial metaserver for Myth 2
jtfield/data_sci_practice
My various data science scripts
jtfield/github-pages-academic-starter-kit
Get your webpage up quickly!
jtfield/Intensiphy
Cron job wrapper for Extensiphy to automate the acquisition of data when updating sequence alignments.
jtfield/java_projects
a repo for my basic java projects as I learn java
jtfield/jtf_data_portfolio
Repo of examples of my data work and things that I can do.
jtfield/jtfield.github.io
hopefully linked to my gitpage
jtfield/phylo_comparison
Code associated with testing and comparing Extensiphy to other methods of alignment assembly. Used in "Rapid Alignment Updating with Extensiphy"
jtfield/project-reproducibility
An example of a reproducible project.
jtfield/python-opentree
Python package for working with Open Tree of Life webservices and artifacts. Importable as opentree
jtfield/R_scripts
R scripts i write... abandon all hope...
jtfield/reference_bias
Code associated with investigating the effects of reference bias.
jtfield/sequence_data_exercise
contains sequence comparison script from ejm
jtfield/shell-novice
The Unix Shell
jtfield/simple-resume-cv
Template for a simple resume or curriculum vitae (CV), in XeLaTeX.
jtfield/supercomputing_kmer_map
Python program development for eventual implementation onto Wuxi Taihulight supercomputer
jtfield/tree_and_snp_analyses
scripts for analyzing phycorder outputs
jtfield/useful_scripts
useful misc scripts for handling data