Tools for metabarcoding fish
Use SpeciesPrimerEval_cl to run from the command line
ex:
conda create --name qiime2R --file qiime2R.list.txt
conda activate qiime2R
chmod +x SpeciesPrimerEval_cl/SpeciesPrimerEval.R
Rscript SpeciesPrimerEval.R 'mifish' 12S-seqs-derep-teleo-seqs.qza 12S-tax-derep-uniq.qza 'herring' fish.txt