Pinned Repositories
anndata
Annotated data.
arboreto
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
docker-library
Collection of Dockerfiles
dREG_analysis
Scripts and instructions for running dREG
Fast-data-portals-for-scRNAseq-data
genimpute
Portable genotype imputation pipeline used by the eQTL Catalogue
HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
ida-backup
ida2-command-line-tools
Command line tools for interacting with v2 of the IDA research data storage service
juhaa's Repositories
juhaa/dREG_analysis
Scripts and instructions for running dREG
juhaa/anndata
Annotated data.
juhaa/arboreto
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
juhaa/docker-library
Collection of Dockerfiles
juhaa/Fast-data-portals-for-scRNAseq-data
juhaa/genimpute
Portable genotype imputation pipeline used by the eQTL Catalogue
juhaa/HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
juhaa/ida-backup
juhaa/ida2-command-line-tools
Command line tools for interacting with v2 of the IDA research data storage service
juhaa/Macbook-setup
To Do -list for a new Macbook
juhaa/pyVDJ
V(D)J sequencing data analysis
juhaa/qcnorm
This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes
juhaa/qtlmap
Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
juhaa/random-scripts
juhaa/regenie-pipelines
WDL pipelines for running regenie
juhaa/rnaseq
RNA-seq quantification pipeline used by the eQTL Catalogue
juhaa/scDD
R package to identify genes with differential distributions in single-cell RNA-seq
juhaa/SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
juhaa/VarID_analysis
VarID analysis of murine hematopoietic progenitors and intestinal epithelial cells. VarID is part of RaceID v0.1.4