Pinned Repositories
circdna
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
CREDOengine
CREDOgui
cresil
CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences
cyrcular
A tool for calling circles from nanopore reads (enriched for circular DNA)
cyrcular-calling
A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.
eca-bioinf-handbook
Lecture notes/book in progress on computing for conservation genomics
ecc_finder
a tool to detect eccDNA using Illumina and ONT sequencing
ecc_pipe
eccDNA_RCA_nanopore
eccDNA identification from nanopore long reads of rolling-circle amplicon
julia-luz's Repositories
julia-luz/circdna
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
julia-luz/CREDOengine
julia-luz/CREDOgui
julia-luz/cresil
CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences
julia-luz/cyrcular
A tool for calling circles from nanopore reads (enriched for circular DNA)
julia-luz/cyrcular-calling
A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.
julia-luz/eca-bioinf-handbook
Lecture notes/book in progress on computing for conservation genomics
julia-luz/ecc_finder
a tool to detect eccDNA using Illumina and ONT sequencing
julia-luz/ecc_pipe
julia-luz/eccDNA_RCA_nanopore
eccDNA identification from nanopore long reads of rolling-circle amplicon
julia-luz/FLED
Full Length eccDNA Detection
julia-luz/Ideoplot
Simple R script for plotting ideograms and annotating with bed files.
julia-luz/intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
julia-luz/shellcheck
ShellCheck, a static analysis tool for shell scripts
julia-luz/sos
SoS workflow system for daily data analysis
julia-luz/sos-notebook
Multi-language Jupyter Notebook
julia-luz/Spoon-Knife
This repo is for demonstration purposes only.
julia-luz/text-processing-recipes-linux
Text processing recipes & reference on Linux.
julia-luz/the-art-of-command-line
Master the command line, in one page