julianeweller's Stars
js2264/HiCExperiment
Importing and manipulating Hi-C data in R
Goosang-Yu/genet
Python library for genome editing, CRISPR gRNA design and prediction
julianeweller/MinsePIE
Modelling insertion efficiency for Prime Insertion Experiments
crisprVerse/crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
deeptools/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
broadinstitute/ABC-Enhancer-Gene-Prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
gencorefacility/reform
Modify existing reference fasta and gff3/gtf files to include a new sequence
fabiolib/bcbb
Incubator for useful bioinformatics code, primarily in Python and R
deeptools/deepTools
Tools to process and analyze deep sequencing data.
jimhester/fasta_utilities
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
Ensembl/rest-api-jupyter-course
Python and R notebooks to be used by Jupyter
NCBI-Hackathons/Master_gff3_parser
Convert sequence IDs between ucsc/refseq/genbank
hotdogee/gff3-py
Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files
gpertea/gffread
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
enovoa/codonAutocorrelation
Compute codon autocorrelation
jvrana/benchling-api
A python wrapper for the benchling api