juliangehring

Bootstrap.jl

Statistical bootstrapping library for Julia

COSMIC.67

COSMIC: Catalogue Of Somatic Mutations In Cancer, version 67 (2013-10-24)

count

Toy project: An efficient "sort x.txt | uniq -c | sort -k1 -rn" in rust

GMAP-GSNAP

*UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for current versions of the source code.

HighSpeedStats

Efficient statistical implementations for high throughput data analysis in R

MultipleTesting.jl

The MultipleTesting package offers common algorithms for p-value adjustment and combination and more…

Rariant

The 'Rariant' package identifies single nucleotide variants based on the difference of binomially distributed mismatch rates between tumor and control samples.

SomaticSignatures

The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments.

TSSi

Transcription Start Sites Identification

juliangehring/Bootstrap.jl

Statistical bootstrapping library for Julia

juliangehring/MultipleTesting.jl

The MultipleTesting package offers common algorithms for p-value adjustment and combination and more…

juliangehring/SomaticSignatures

The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments.

juliangehring/count

Toy project: An efficient "sort x.txt | uniq -c | sort -k1 -rn" in rust

juliangehring/HighSpeedStats

Efficient statistical implementations for high throughput data analysis in R

juliangehring/Rariant

The 'Rariant' package identifies single nucleotide variants based on the difference of binomially distributed mismatch rates between tumor and control samples.

juliangehring/basespace-help

BaseSpace Docs Repo

juliangehring/bat

A cat(1) clone with wings.

juliangehring/bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

juliangehring/BLAKE3

the official Rust and C implementations of the BLAKE3 cryptographic hash function

juliangehring/cli-wg

CLI working group

juliangehring/cyvcf2

cython + htslib == fast VCF and BCF processing

juliangehring/Documenter.jl

A documentation generator for Julia.

juliangehring/hashbrown

Rust port of Google's SwissTable hash map

juliangehring/htslib

C library for high-throughput sequencing data formats

juliangehring/itty-router-openapi

OpenAPI 3 schema generator and validator for Cloudflare Workers

juliangehring/MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

juliangehring/noodles

Bioinformatics I/O libraries in Rust

juliangehring/Polaris

Data and information about the Polaris study

juliangehring/pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

juliangehring/rust

Empowering everyone to build reliable and efficient software.

juliangehring/rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

juliangehring/rust-bio.github.io

Github pages for Rust-Bio

juliangehring/rust-by-example

Learn Rust with examples (Live code editor included)

juliangehring/rust-cookbook

https://rust-lang-nursery.github.io/rust-cookbook

juliangehring/rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

juliangehring/samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

juliangehring/sccache

sccache is ccache with cloud storage

juliangehring/SomaticCancerAlterations

juliangehring/starship

☄🌌️ The minimal, blazing-fast, and infinitely customizable prompt for any shell!