Pinned Repositories
autodock_scripts
aviary
A snakemake pipeline for binning metagenomic assemblies
B04Sm5_genome_completion
Completing and closing the genome of Streptococcus mutans strain B04Sm5 using composite long and short-read sequencing.
Bayesian_Network_Python
Create and parameterise bayesian networks
bioinformatics_scripts
Random collection of scripts used for bioinformatics analyses. May or may not function. Most written by me.
ccfind
ccfind - circular complete genome finder with clues of terminal redundancy
CFphage_pipe
julianzaugg's Repositories
julianzaugg/aviary
A snakemake pipeline for binning metagenomic assemblies
julianzaugg/B04Sm5_genome_completion
Completing and closing the genome of Streptococcus mutans strain B04Sm5 using composite long and short-read sequencing.
julianzaugg/Bayesian_Network_Python
Create and parameterise bayesian networks
julianzaugg/bioinformatics_scripts
Random collection of scripts used for bioinformatics analyses. May or may not function. Most written by me.
julianzaugg/ccfind
ccfind - circular complete genome finder with clues of terminal redundancy
julianzaugg/CFphage_pipe
julianzaugg/Compare_Compounds
julianzaugg/Example_qiime2
Example (somewhat hacky) script for running qiime2 on ACE's servers for amplicon data
julianzaugg/get_neighbours
julianzaugg/Fix_NCBI_MAG_submission
Fix automated errors during the submission of MAGs to NCBI due to adaptors by removing problematic regions
julianzaugg/julianzaugg.github.io
julianzaugg/katuali
Analysis pipelines from Oxford Nanopore Technologies' Research Division
julianzaugg/MAP
Microbiome analysis package (MAP)
julianzaugg/md_scripts
julianzaugg/MET
GIH MET pipeline
julianzaugg/Metagenomics-Index-Correction
julianzaugg/mine_waste
julianzaugg/OM_respiratory_tract_16S_2021
Analysis scripts and data for "The upper respiratory tract microbiome of Australian Aboriginal and Torres Strait Islander children in ear and nose health and disease; a prospective cohort study"
julianzaugg/otitis_project
julianzaugg/pairwiseAdonis
Pairwise multilevel comparison using adonis
julianzaugg/PDProcessing
Package to handle processing of results file from PairDistances java package
julianzaugg/PhagePipe
julianzaugg/PIGC
The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
julianzaugg/skin_microbiome_16S
julianzaugg/Skin_microbiome_SCC_OTR_rRNA_2021
Analysis scripts for "Changes in the skin microbiome associated with squamous cell carcinoma in transplant recipients"
julianzaugg/TVBOT
Beautify the phylogenetic tree using one Excel sheet only
julianzaugg/variable_rate_testing
Compare ancestral reconstruction tools
julianzaugg/Various-Scripts
julianzaugg/veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
julianzaugg/viral_annotate
Simple snakemake pipeline to annotate viral sequences.