Pinned Repositories
daTALbase
daTALbase - Database for TAL Effectors analysis
FROGS
FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
scripts-1
culebrONT
A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
singularityRecipeFiles
This repository provides a series of Singularity recipe files used to easily deploy numerous bioinformatics softwares through containers.All these Singularity recipes are ready to be used by the bioinformatics community and have been developed to be integrated into the workflow manager TOGGLe http://toggle.southgreen.fr.
TOGGLE
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
training_ONT_teaching
training_reproducible_research
Training on Tools for Reproducible Research given by SouthGreen
trainings
The South Green platform has conducted a series of training courses for several years and this github repository gives access to all trainings (https://southgreenplatform.github.io/trainings/).
tutorials
An open resource material for people who wish to know about bioinformatics specially users of the Southgreen Platform (https://southgreenplatform.github.io/tutorials/). It contains tips, tutorials on bioinformatics analysis and softwares.
julieaorjuela's Repositories
julieaorjuela/daTALbase
daTALbase - Database for TAL Effectors analysis
julieaorjuela/FROGS
FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
julieaorjuela/scripts-1