Pinned Repositories
centroAnno
CentroRepeatAnalyzer
cgranges
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
CHM13
The complete sequence of a human genome
editdist
Fast implementation of Ukkenon's O(ND) algorithm for computing edit distance
FP-Zernike
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hybrid_clustering
MSNANOSIM
TDFPSDesigner
junhaiqi's Repositories
junhaiqi/FP-Zernike
junhaiqi/Hybrid_clustering
junhaiqi/MSNANOSIM
junhaiqi/TDFPSDesigner
junhaiqi/centroAnno
junhaiqi/CentroRepeatAnalyzer
junhaiqi/cgranges
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
junhaiqi/CHM13
The complete sequence of a human genome
junhaiqi/editdist
Fast implementation of Ukkenon's O(ND) algorithm for computing edit distance
junhaiqi/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
junhaiqi/klib
A standalone and lightweight C library
junhaiqi/kmer-cnt
Code examples of fast and simple k-mer counters for tutorial purposes
junhaiqi/miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
junhaiqi/msaLW
Lightweight multiple sequence alignment based on spoa algorithm
junhaiqi/NextPolish2
Repeat-aware polishing genomes assembled using HiFi long reads
junhaiqi/zenodo-upload
upload big files to Zenodo using cURL, jq and bash