These workflows are written in Workflow Description Language (WDL) to support creation of the Consortium of Long Read Sequencing database (CoLoRSdb). Variant databases produced from this workflow are found at DOI 10.5281/zenodo.11511512.
The cohort-level CoLoRS workflow performs alignment, quality control, variant calling, joint-calling small variants and structural variants for a cohort. The workflow can run using Azure, AWS, GCP, and HPC backends but has not been tested on all these platforms.
If you notice any missing features, bugs, or need assistance with analyzing the output, please don't hesitate to reach out by email or open a GitHub issue.