jurgjn

af-protein-universe

af2_pockets

Code and intermediate results of pocket detection and function prediction analyses presented in (Akdel et al. 2021).

af2genomics

jc

relmapping

A disorderly mass of code related to mapping regulatory elements in nematodes; aimed at limited use between collaborators.

yapc

(Yet another) peak caller for high-throughput sequencing data such as ATAC-seq, DNase-seq or ChIP-seq. Useful for identifying representative peaks across multiple conditions (e.g. time-series data, binding of different factors belonging to the same complex). Seems to work well for specific datasets-of-interest, but has not been extensively tested.

jurgjn/af-protein-universe

jurgjn/relmapping

A disorderly mass of code related to mapping regulatory elements in nematodes; aimed at limited use between collaborators.

jurgjn/af2_pockets

Code and intermediate results of pocket detection and function prediction analyses presented in (Akdel et al. 2021).

jurgjn/af2genomics

jurgjn/jc

jurgjn/yapc

(Yet another) peak caller for high-throughput sequencing data such as ATAC-seq, DNase-seq or ChIP-seq. Useful for identifying representative peaks across multiple conditions (e.g. time-series data, binding of different factors belonging to the same complex). Seems to work well for specific datasets-of-interest, but has not been extensively tested.

jurgjn/9clot

jurgjn/af-human-pocketome

jurgjn/af-human-pocketome-

jurgjn/af-protein-universe-evolution

jurgjn/af2genomics-recovery

jurgjn/alphafold_on_euler

Adapted from:

jurgjn/amuse

The main repository for AMUSE can be found at: https://github.com/amusecode/amuse/

jurgjn/bioconda-recipes

Conda recipes for the bioconda channel.

jurgjn/browse-var

jurgjn/colony-picker

jurgjn/DecoyFinder

A tool that helps finding decoy molecules for a given target, provided a set of active molecules.

jurgjn/docking_praktikum

jurgjn/EquiBind

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

jurgjn/hackathon-q2

2 - How are these GEFs/GAPs themselves regulated by PTMs and mutations in cancer

jurgjn/hotspots

A knowledge-based method for determining small molecule binding "hotspots".

jurgjn/Jupyter-on-Euler-or-Leonhard-Open

Adapted from:

jurgjn/jurgjn.github.io

jurgjn/mc-solarized-skin

Midnight-Commander Solarized. Forked from https://github.com/janekr/mc-solarized-skin

jurgjn/Piazza2020-browse

jurgjn/qsar-tools

Scripts for assisting in modeling quantitative structure activity relationships from 2D chemical data

jurgjn/RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

jurgjn/smina

Forked from: http://smina.sourceforge.net

jurgjn/tractability_smk