jvanalstine

Pinned Repositories

arrow
Apache Arrow is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. It also provides computational libraries and zero-copy streaming messaging and interprocess communication. Languages currently supported include C, C++, Java, JavaScript, Python, and Ruby.
Language:C++00
breakseq2
BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
Language:Python00
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Language:C00
CNVnator
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
Language:C++00
gatk
Official code repository for GATK versions 4 and up
Language:Java00
pypgx
A Python package for pharmacogenomics research
Language:Python00
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C00
tern
The SQL Fan's Migrator
Language:Go00
TileDB
The Universal Storage Engine
Language:C++00
TileDB-FastQ
FastQ ingestor using TileDB storage format
Language:C++00

jvanalstine's Repositories

jvanalstine/arrow
Apache Arrow is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. It also provides computational libraries and zero-copy streaming messaging and interprocess communication. Languages currently supported include C, C++, Java, JavaScript, Python, and Ruby.
Language:C++00
jvanalstine/breakseq2
BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
Language:Python00
jvanalstine/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Language:C00
jvanalstine/CNVnator
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
Language:C++00
jvanalstine/gatk
Official code repository for GATK versions 4 and up
Language:Java00
jvanalstine/pypgx
A Python package for pharmacogenomics research
Language:Python00
jvanalstine/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C00
jvanalstine/tern
The SQL Fan's Migrator
Language:Go00
jvanalstine/TileDB
The Universal Storage Engine
Language:C++00
jvanalstine/TileDB-FastQ
FastQ ingestor using TileDB storage format
Language:C++00
jvanalstine/TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.