Pinned Repositories
2d_lighthouse_tracking
2d tracking with valve lighthouse on teensy
analysis-tools
Code for analyzing data saved by the Open Ephys GUI
figure-plot-illustration-tools
Tools for making figures/plots/illustrations, mostly matlab/illustrator
regularized_models_demo
Demonstrates a few simple applications of L2 regularization
rotating-2p-image-correction
code for Voigts & Harnett, Somatic and dendritic encoding of spatial variables in retrosplenial cortex differs during 2-D navigation
tenss_spike_pipeline_tutorial
minimal spike extraction and sorting
whisker_tracking
Unsupervised whisker tracking in freely behaving mice/rats
acquisition-board
Hardware interface for streaming up to 512 channels of neural data via USB
headstage
32-channel headstage based on the Intan RHD2132 chip
plugin-GUI
Software for processing, recording, and visualizing multichannel electrophysiology data
jvoigts's Repositories
jvoigts/whisker_tracking
Unsupervised whisker tracking in freely behaving mice/rats
jvoigts/rotating-2p-image-correction
code for Voigts & Harnett, Somatic and dendritic encoding of spatial variables in retrosplenial cortex differs during 2-D navigation
jvoigts/2d_lighthouse_tracking
2d tracking with valve lighthouse on teensy
jvoigts/regularized_models_demo
Demonstrates a few simple applications of L2 regularization
jvoigts/tenss_spike_pipeline_tutorial
minimal spike extraction and sorting
jvoigts/2p_analysis
Tools for analyzing 2p data
jvoigts/2p_opto_filters
calculate filters for 2p opto
jvoigts/find_halfspace_matlab
fast lookup in sorted arrays in matlab
jvoigts/neuron_coding_perspective
jvoigts/open-ephys-lfp-plot-optimization
test code for optimal time series rendering
jvoigts/optical_flow_analysis
Applies the Horn–Schunck method to a video and extract motion profile over time.
jvoigts/2p_alignment_targets
alignment aides for neurolabware 2p scope
jvoigts/2p_flow_perfusion_system
jvoigts/bonsai-osc-bidirectional-example
Sending data back and forth between bonsai and a pyqt python program via Osc
jvoigts/cajal_ephys_course
jvoigts/chronic_window_spacer
machined holder to replace stacked cover slip windows
jvoigts/drive_assembly_jigs
assembly jigs for hd drive
jvoigts/free_mouse_behaviour_rig
jvoigts/grommets
grommets for eeg-fmri
jvoigts/headstage
32-channel headstage based on the Intan RHD2132 chip
jvoigts/intan_CLAMP
fork of the intan clamp software
jvoigts/jonnew-lbr
jonnew's personal CAD library
jvoigts/Miniscope_Analysis
MATLAB analysis functions for Miniscope project.
jvoigts/mountainlab-js
MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting software, but is designed to be more generally applicable.
jvoigts/Oat
Real-time position tracker for behavioral research
jvoigts/plugin-GUI
Open Ephys GUI with plugin architecture
jvoigts/public-presentations
My public presentations
jvoigts/radiator_cover
jvoigts/stereopsis_test
very simple depth perception test
jvoigts/syringe_pump
simple, precise syringe pump, optimized for price of batches of ~10-50