/Metaxas

An under-construction pipeline for assembly of QC'd illumina metagenomic sequencing reads.

Primary LanguageShell

Welcome to Metaxas, the only ouzo-themed metagenomic assembly pipeline! (v0.0.1; under heavy development; not ready for use)

Dependencies:

IDBA_UD, Bowtie2, Samtools, Anvio4, MetaBat, MaxBin, CONCOCT, Abawaca?, MyCC

TODO:

Get ESOM running!!!!!