MS2 spectral intensity-based label-free quantification of LC-MS/MS data
NOTE: This is an early prototype of the software. The current version is compiled into the Trans-Proteomic Pipeline
> virtualenv env
> source env/bin/activate
> pip install -r requirements.txt
Standard 1% FDR cutoff and 0.4 Da MS2 tolerance
> python StPeter.py myfile.prot.xml
To see additional options:
> python StPeter.py -h