/TPP_utilities

Utilities for handling Trans-Proteomic Pipeline output

Primary LanguagePython

Tools for exporting TPP results to csv (Excel-compatible) format

Installation (Requires python 2.7):

virtualenv env
source env/bin/activate
pip install -r REQUIREMENTS.txt

Usage example:

python ProtXML2Csv.py -f 0.01 myfile.interact.iproph.prot.xml

This will generate myfile.interact.iproph.prot.csv, filtered at a 1% (model-based) FDR.