Pinned Repositories
2019GenomicsEpidemiologyWorkshop
2019 Genomics Epidemiology Workshop at Academia Sinica
CancerVar
Clinical interpretation of somatic mutations in cancer
cORF_pipeline
diffab
✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
docker-hlascan
HLAscan
OligoLego
A tool for Oligopaints library design
openPrimeR-User
Distribution of openPrimeR, openPrimeRui, and dependencies
ScanNet
SuperEnhancer_pipeline
A pipeline to locate super-enhancer regions
jxshi's Repositories
jxshi/AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
jxshi/AlphaPulldown
jxshi/antibody-affinity
Antibody affinity modeling
jxshi/AntiFold
Improved antibody structure-based design using inverse folding
jxshi/awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
jxshi/casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
jxshi/chai-lab
Chai-1, SOTA model for biomolecular structure prediction
jxshi/DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
jxshi/EnzymeFlow
Official repository of EnzymeFlow
jxshi/esm
jxshi/EvolvePro
This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
jxshi/GENzyme
Official repository of GENzyme
jxshi/GeoAB
This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
jxshi/grok-1
Grok open release
jxshi/iptv
Collection of publicly available IPTV channels from all over the world
jxshi/locuaz
Antibody optimization platform
jxshi/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
jxshi/NeoNectin
Codes Used for NeoNectin Development
jxshi/NetTCR-2.2
Sequence-based prediction of peptide-TCR interactions using paired chain data
jxshi/NGS-PrimerPlex
NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
jxshi/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
jxshi/prodigy
Predict the binding affinity of protein-protein complexes from structural data
jxshi/ReactZyme
Official repository of ReactZyme
jxshi/RFdiffusion
Code for running RFdiffusion
jxshi/scGPT
jxshi/scRNAtoolVis
Useful functions to make your scRNA-seq plot more cool!
jxshi/SEMAi
Spatial Epitope Modeling with Artificial intelligence (SEMA)
jxshi/TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
jxshi/tfold
open source code for Tencent tFold
jxshi/zed
Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.