jydu
Molecular Evolution, Population Genomics, Systems Biology, Bioinformatics
Max Planck Institute for Evolutionary BiologyPlön - Germany
Pinned Repositories
coalhmm
The Coalescent Hidden Markov Model
comap
A package for detecting coevolving positions in a sequence alignment, using COsubstitution MAPping.
contest
homebrew-biopp
Bio++ Homebrew Repository
LDhat
Estimate recombination rates from population genetic data
maffilter
The MafFilter genome alignment processor
minima
Minima is a one-size-fits-all Jekyll theme for writers.
MK-regression
A regression model to infer the independent effects of genomic features on the rate of adaptive evolution
physamp
Phylogenetic Sampling and Optimization of sequence alignments
vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
jydu's Repositories
jydu/maffilter
The MafFilter genome alignment processor
jydu/coalhmm
The Coalescent Hidden Markov Model
jydu/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
jydu/comap
A package for detecting coevolving positions in a sequence alignment, using COsubstitution MAPping.
jydu/contest
jydu/homebrew-biopp
Bio++ Homebrew Repository
jydu/LDhat
Estimate recombination rates from population genetic data
jydu/minima
Minima is a one-size-fits-all Jekyll theme for writers.
jydu/MK-regression
A regression model to infer the independent effects of genomic features on the rate of adaptive evolution
jydu/physamp
Phylogenetic Sampling and Optimization of sequence alignments
jydu/msmc-tools
Tools and Utilities for msmc and msmc2
jydu/r-source
Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.
jydu/rr2
R2 for correlated data; see https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syy060/5098616
jydu/sgedtools
Tools to handle files in the SGED (Site Group Estensible Data) format