/rna_library

Primary LanguagePython

RNA Library

Documentation Status

Installation

  1. Dependencies $ pip install -r requirements.txt
  2. package installation $ python setup.py install

Basic Usage

Parsing Structures

The folllwing code:

import rna_library as rl

for m in rl.SecStruct('(((...(((...(((...)))...)))...)))', 
			'NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN'):
	print(m)

Should produce this:

Helix,NNN&NNN,(((&)))
Junction,NNNNN&NNNNN,(...(&)...)
Helix,NNN&NNN,(((&)))
Junction,NNNNN&NNNNN,(...(&)...)
Helix,NNN&NNN,(((&)))
Hairpin,NNNNN,(...)