Pinned Repositories
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
cbgt2
rewrite of a basal ganglia simulator
CBGT_maximize_RR
Code and analysis scripts for manuscript - "How cortico-basal ganglia-thalamic subnetworks can shift decision policies to maximize reward rate"
CBGTPy
Rewrite of a basal ganglia simulator by Matthew Clapp.
cerebellarMaps
Python-based scripts used for analysis of cerebellar maps in Spaeth et al.
comparing-trajectory-clustering-methods
Comparing Different Clustering Methods and Similarity Metrics on Trajectory Datasets
hmmlearn
Hidden Markov Models in Python, with scikit-learn like API
manim
A community-maintained Python framework for creating mathematical animations.
stn_gpe_ssbn
Code for the paper "Uncoupling the roles of firing rates and spike bursts in shaping the GPe-STN beta band oscillations"
striatal-action-value-neurons-reconsidered-codes
here you can find the codes for the paper by this name in elife (2018)
jyotikab's Repositories
jyotikab/stn_gpe_ssbn
Code for the paper "Uncoupling the roles of firing rates and spike bursts in shaping the GPe-STN beta band oscillations"
jyotikab/cbgt2
rewrite of a basal ganglia simulator
jyotikab/CBGTPy
Rewrite of a basal ganglia simulator by Matthew Clapp.
jyotikab/hmmlearn
Hidden Markov Models in Python, with scikit-learn like API
jyotikab/manim
A community-maintained Python framework for creating mathematical animations.
jyotikab/striatal-action-value-neurons-reconsidered-codes
here you can find the codes for the paper by this name in elife (2018)
jyotikab/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
jyotikab/CBGT_maximize_RR
Code and analysis scripts for manuscript - "How cortico-basal ganglia-thalamic subnetworks can shift decision policies to maximize reward rate"
jyotikab/cerebellarMaps
Python-based scripts used for analysis of cerebellar maps in Spaeth et al.
jyotikab/comparing-trajectory-clustering-methods
Comparing Different Clustering Methods and Similarity Metrics on Trajectory Datasets
jyotikab/dPCA
An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)
jyotikab/dynamic_decision_policy_reconfiguration
Data, analyses, and visualizations for paper: https://www.biorxiv.org/content/10.1101/2020.11.27.401737v1
jyotikab/EEG-Datasets
A list of all public EEG-datasets
jyotikab/glmhmm
code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs)
jyotikab/HMM-MAR
Toolbox for segmentation and characterisation of transient connectivity
jyotikab/Homology_BG
Code for Homology Manuscript
jyotikab/loki_1
BG network responses to conflict and volatility + perceptual learning of hierarchical classes.
jyotikab/PyEMD
Python implementation of Empirical Mode Decompoisition (EMD) method
jyotikab/retreat
jyotikab/sbi
Simulation-based inference in PyTorch
jyotikab/SpectralPowerFitting
Optimal Model Parameter Estimation From EEG Power Spectrum Features Observed During General Anesthesia, Hashemi et al, Neuroinformatics 2018
jyotikab/ssm
Bayesian learning and inference for state space models
jyotikab/stn_gpe_model_data_fit