draw.GSEA.NetBID() has a bug
igrisch opened this issue · 0 comments
igrisch commented
In the rare cases when there is a driver which we have DA values for, but whose corresponding gene was not in the expression matrix (resulting in NA values in the DE columns), the draw.GSEA.NetBID() function glitches. It does not cause a visible error, but the plot will display incorrect DE p-values in the DE column. I assume this is due to the NA values being ignored, so the ordering of the DE genes/DA drivers gets thrown out of alignment.