jzthree
Computational Biology and Machine Learning Lab at UTSW (zhoulab.io)
UT SouthwesternUnited States
Pinned Repositories
ExPecto
predicting expression effects of human genome variants ab initio from sequence
sei-framework
code to run sei and obtain sei and sequence class predictions
selene
a framework for training sequence-level deep learning networks
ddsm
Dirichlet Diffusion Score Model for Biological Sequence Generation.
orca
sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale
puffin
deep learning-inspired explainable sequence model for transcription initiation
bioconda-recipes
Conda recipes for the bioconda channel.
GraphBoard
LD_script
Makefile and scripts for computing human linkage disequilibrium from 1000 Genomes data
jzthree's Repositories
jzthree/GraphBoard
jzthree/LD_script
Makefile and scripts for computing human linkage disequilibrium from 1000 Genomes data
jzthree/bioconda-recipes
Conda recipes for the bioconda channel.
jzthree/mini_projects
Mini project scripts for various problems that I didn't know a pre-existing satisfying solution for (NDEA, weighted.cortest, ...).
jzthree/function
Python library for functional genomics
jzthree/locfdr
This is a fork of Efron's locfdr packages to provide slightly more flexibility
jzthree/nmslib
Non-Metric Space Library (NMSLIB): An efficient similarity search library and a toolkit for evaluation of k-NN methods for generic non-metric spaces.
jzthree/selene
a framework for training sequence-level deep learning networks
jzthree/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
jzthree/umap
Uniform Manifold Approximation and Projection