jzthree

ExPecto

predicting expression effects of human genome variants ab initio from sequence

sei-framework

code to run sei and obtain sei and sequence class predictions

selene

a framework for training sequence-level deep learning networks

ddsm

Dirichlet Diffusion Score Model for Biological Sequence Generation.

orca

sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale

puffin

deep learning-inspired explainable sequence model for transcription initiation

bioconda-recipes

Conda recipes for the bioconda channel.

GraphBoard

LD_script

Makefile and scripts for computing human linkage disequilibrium from 1000 Genomes data

jzthree/GraphBoard

jzthree/LD_script

Makefile and scripts for computing human linkage disequilibrium from 1000 Genomes data

jzthree/bioconda-recipes

Conda recipes for the bioconda channel.

jzthree/mini_projects

Mini project scripts for various problems that I didn't know a pre-existing satisfying solution for (NDEA, weighted.cortest, ...).

jzthree/function

Python library for functional genomics

jzthree/locfdr

This is a fork of Efron's locfdr packages to provide slightly more flexibility

jzthree/nmslib

Non-Metric Space Library (NMSLIB): An efficient similarity search library and a toolkit for evaluation of k-NN methods for generic non-metric spaces.

jzthree/selene

a framework for training sequence-level deep learning networks

jzthree/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

jzthree/umap

Uniform Manifold Approximation and Projection