kaandocal
PhD candidate working on modelling and inference for stochastic biochemical systems.
University of Edinburgh
Pinned Repositories
AbstractGPs.jl
Abstract types and methods for Gaussian Processes.
AbstractMCMC.jl
Abstract types and interfaces for Markov chain Monte Carlo methods
AdvancedHMC.jl
Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms
AdvancedMH.jl
Robust implementation for random-walk Metropolis-Hastings algorithms
evolutica
MixtureModels.jl
Expectation-Maximisation algorithms to fit mixture distributions in Julia.
stan_rnaseq
Bayesian mechanistic modelling of scRNAseq data using Stan
synmod
Code for the paper "Inference and uncertainty quantification for stochastic gene expression via synthetic models"
wasserstein_inference
Code for the project "Parameter estimation for biochemical reaction networks using Wasserstein distances"
FiniteStateProjection.jl
Finite State Projection algorithms for chemical reaction networks
kaandocal's Repositories
kaandocal/wasserstein_inference
Code for the project "Parameter estimation for biochemical reaction networks using Wasserstein distances"
kaandocal/MixtureModels.jl
Expectation-Maximisation algorithms to fit mixture distributions in Julia.
kaandocal/synmod
Code for the paper "Inference and uncertainty quantification for stochastic gene expression via synthetic models"
kaandocal/AbstractGPs.jl
Abstract types and methods for Gaussian Processes.
kaandocal/AbstractMCMC.jl
Abstract types and interfaces for Markov chain Monte Carlo methods
kaandocal/AdvancedHMC.jl
Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms
kaandocal/AdvancedMH.jl
Robust implementation for random-walk Metropolis-Hastings algorithms
kaandocal/evolutica
kaandocal/HMMBase.jl
Hidden Markov Models for Julia.
kaandocal/KernelFunctions.jl
Julia package for kernel functions for machine learning
kaandocal/stan_rnaseq
Bayesian mechanistic modelling of scRNAseq data using Stan
kaandocal/modred
kaandocal/MomentClosure.jl
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
kaandocal/MultivariatePolynomials.jl
Multivariate polynomials interface