Pinned Repositories
ASCT
Automatic Single-cell Toolbox
awesome
Collection of useful resources on Bioinformatics, data science, machine learning programming language (Python, Golang, R, Perl) and miscellaneous stuff.
bed
Bayesian Epiallele Detection (BED)
biotools
A list of useful bioinformatics resources
bwa-meth
fast and accurate alignment of BS-Seq reads
cheatsheets
RStudio Cheat Sheets
Cpp
r-ninja
R语言忍者秘笈
R_scripts
scRNA.seq.course
Analysis of single cell RNA-seq data course
kaji331's Repositories
kaji331/ASCT
Automatic Single-cell Toolbox
kaji331/r-ninja
R语言忍者秘笈
kaji331/R_scripts
kaji331/scRNA.seq.course
Analysis of single cell RNA-seq data course
kaji331/awesome
Collection of useful resources on Bioinformatics, data science, machine learning programming language (Python, Golang, R, Perl) and miscellaneous stuff.
kaji331/bed
Bayesian Epiallele Detection (BED)
kaji331/biotools
A list of useful bioinformatics resources
kaji331/bwa-meth
fast and accurate alignment of BS-Seq reads
kaji331/cheatsheets
RStudio Cheat Sheets
kaji331/Cpp
kaji331/edmr
Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.
kaji331/Fastq_clean
Fastq_clean is optimised to batchly clean the NGS data from the IlluminaTM sequencer
kaji331/fastQValidator
Validate FastQ Files
kaji331/Findpeaks.jl
Contains `findpeaks` function for Julia (v1.0)
kaji331/genome-scripts
Genome Scripts used in fungal comparative genomics
kaji331/hmmcopy_utils
Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.
kaji331/icages
iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient
kaji331/KernelDensitySJ.jl
Bandwidth selection using Sheather and Jones algorithm (sometimes known as width.SJ or bw.SJ)
kaji331/labs
Scripts for HarvardX courses: PH525x
kaji331/Leiden.jl
A Julia implementation of the Leiden algorithm for community detection.
kaji331/libStatGen
Useful set of classes for creating statistical genetic programs.
kaji331/markdown-toclify
A Python command line tool that creates a Table of Contents for Markdown documents
kaji331/NGS
kaji331/pattern_classification
A collection of tutorials and examples for solving and understanding machine learning and pattern classification tasks
kaji331/quickpalette
🏃♀️🎨 R package for quick extraction of color palettes from text and images
kaji331/RNA_pipeline
RNA pipeline for paired-end data with three tool-chain.
kaji331/SeqMule
Automated human exome/genome variants detection from FASTQ files
kaji331/SGZ
kaji331/singleCellSeq
Batch effects and the effective design of single-cell gene expression studies
kaji331/Subread_to_DEXSeq
A way to use FeatureCounts output for DEXSeq