/prebotc-graph-model

Bursting neuron model of the pre-Botzinger complex, implementing multiple neuron types and arbitrary network structure

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

prebotc-graph-model

A model of the pre-Botzinger complex, implementing multiple neuron types and arbitrary network structure. Published as:

Harris KD, Dashevskiy T, Mendoza J, Garcia AJ 3rd, Ramirez JM, Shea-Brown E. "Different roles for inhibition in the rhythm-generating respiratory network." J Neurophysiol. 2017 Jun 14:jn.00174.2017. doi: 10.1152/jn.00174.2017.

subdirectories

  • graphs - code to generate graphs
  • model - python code which integrates the odes
  • pipeline - sequential commands to run simulation and analysis
  • postprocessing - processes the output from the model