Pinned Repositories
CompleteTCR
Repertoire determination from RNAseq of paired TCR chains
express
Docker for eXpress https://pachterlab.github.io/eXpress v1.5.1
fpfilter-tool
Fuzzy_CoCA
Conversion of Pavana Anur's fuzzy cluster-of-clusters algorithm to pipeline
gatk-cocleaning-tool
gatk4-somatic-snvs-indels
Workflows for somatic short variant discovery with GATK4
mc3
tcgavcf-tool
vcf-tools
indelocator-tool
kamichiotti's Repositories
kamichiotti/CompleteTCR
Repertoire determination from RNAseq of paired TCR chains
kamichiotti/express
Docker for eXpress https://pachterlab.github.io/eXpress v1.5.1
kamichiotti/fpfilter-tool
kamichiotti/Fuzzy_CoCA
Conversion of Pavana Anur's fuzzy cluster-of-clusters algorithm to pipeline
kamichiotti/gatk-cocleaning-tool
kamichiotti/gatk4-somatic-snvs-indels
Workflows for somatic short variant discovery with GATK4
kamichiotti/mc3
kamichiotti/tcgavcf-tool
kamichiotti/vcf-tools
kamichiotti/indelocator-tool
kamichiotti/knife-machete-spachete
RNAseq Fusion Detection Pipeline
kamichiotti/muse-tool
kamichiotti/mutect-tool
kamichiotti/pancan-maf-merge
kamichiotti/picard-tool
kamichiotti/pindel-tool
kamichiotti/samtools-tool
kamichiotti/somaticsniper-tool
kamichiotti/SPACHETE
MACHETE SPORK fusion
kamichiotti/varscan-tool
kamichiotti/vcf2maf-tools
Suite of tools from https://github.com/mskcc/vcf2maf/