Unknown error during index construction

[sanjaysrikakulam]

Hi,

I am trying to construct an index for an RNA sequencing dataset and as soon as this step starts Monotigs computed, now regular indexing start I get the following --------terminate called recursively Aborted (core dumped) error and the program terminates. Not sure what is happening. Any help on this would be great.

System info:
CentOS 7
AMD EPYC 7702 64-Core Processor
1.5 TiB RAM

# REINDEER installation and testing
conda create --name reindeer gcc cmake compilers gxx
conda activate reindeer
git clone --recursive https://github.com/kamimrcht/REINDEER.git
cd REINDEER
bash install.sh
bash test.sh

# Running REINDEER with my dataset
./Reindeer --index -f rna_seq_fof.txt --bcalm --nocount -k 21 -t 64 -o reindeer_output

NOTE: I modified bcalm launch option "-abundance-min" from 2 to 1 in the launch_bcalm.cpp

[kamimrcht]

Hi Sanjay,
Sorry for the delay. Can I access the data you're using, or could you produce a minimal example where the bug happens?
Ty.

C

[sanjaysrikakulam]

Hi,

I am using the same 2585 RNA-seq experiment mentioned in the paper.