kamimrcht/REINDEER

Issues

• Compilation issue

  #30 opened 4 months ago by SwapnilDoijad
  2

• Tabs in the headers of the query fasta file

  #29 opened 5 months ago by hetica
  0

• Segmentation Fault with Multiple Threads and zstr::Exception on Single Thread When Indexing Unitigs

  #28 opened 5 months ago by SafaMADDOURI
  0

• Skip kmers with N instead of skipping entire sequences with N

  #27 opened 6 months ago by tbenavi1
  0

• Output contains only * with no counts

  #26 opened 6 months ago by tbenavi1
  0

• Error during index step, terminate called after throwing an instance of 'std::invalid_argument'

  #25 opened 6 months ago by tbenavi1
  0

• Installlation question

  #24 opened 8 months ago by roggenkamps
  0

• Installation issue

  #22 opened a year ago by Mathiascode3
  4

• Counts matrix file output.

  #20 opened 2 years ago by dosshra
  0

• query index through api

  #19 opened 3 years ago by chklopp
  7

• index construction when kmer = read length

  #18 opened 3 years ago by chklopp
  11

• Unknown error during index construction

  #17 opened 3 years ago by sanjaysrikakulam
  2

• Output of log-count

  #16 opened 4 years ago by MitraDarja
  0

• malloc(): invalid size (unsorted) during a query

  #13 opened 4 years ago by MitraDarja
  5

• segfault when running queries over multiple threads

  #14 opened 4 years ago by Gortaf
  1

• Problem of unitig position shift in query results

  #12 opened 4 years ago by hl-xue
  0

• output format

  #11 opened 4 years ago by chklopp
  3

• [usability] Is Bcalm path hardcoded?

  #7 opened 5 years ago by Krannich479
  2

• Feature Request: option to create a fasta file with unique monotig sequences

  #10 opened 4 years ago by SionBayliss
  3

• Can this be used to extract the match origins?

  #9 opened 5 years ago by rickbeeloo
  1

• error setting rlimit when --index

  #8 opened 5 years ago by Krannich479
  1

• query doesn't return anything if it starts with a 'N'

  #6 opened 5 years ago by rchikhi
  1

• query segfaults when query sequence is shorter than k

  #5 opened 5 years ago by rchikhi
  1

• Index construction fails with g++ version 9.3.0

  #4 opened 5 years ago by mikael-s
  4

• Camille: what's this file?

  #3 opened 5 years ago by rchikhi
  2

• Subscribe to this issue for news on REINDEER development

  #1 opened 5 years ago by rchikhi
  0

• Discussions

  #2 opened 5 years ago by rchikhi
  0