MitraDarja
PhD Student, interested in probabilistic data structures, compression strategies, fun algorithms and applications using bioinformatics to aid medical research
Max Planck Institute for Molecular GeneticsBerlin
Pinned Repositories
analysis_needle
app-template
This is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.
BAMIntervalTree
bioconda-recipes
Conda recipes for the bioconda channel.
cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
hello-world
Just a simple test
needle
Fast and efficient searches of NGS data
seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
needle
A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
MitraDarja's Repositories
MitraDarja/needle
Fast and efficient searches of NGS data
MitraDarja/analysis_needle
MitraDarja/app-template
This is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.
MitraDarja/BAMIntervalTree
MitraDarja/bioconda-recipes
Conda recipes for the bioconda channel.
MitraDarja/cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
MitraDarja/hello-world
Just a simple test
MitraDarja/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
MitraDarja/When-will-this-semester-end...
MitraDarja/hibf_lib
Work in progress for the HIBF.
MitraDarja/i-am-a-horse-in-the-land-of-booleans
MitraDarja/minimizer_ibf
Contains reference data and code for computing minimizers and the IBF
MitraDarja/p-p-p-pokerface
MitraDarja/pathint
Code to accompany our paper "Continual Learning Through Synaptic Intelligence" ICML 2017
MitraDarja/predicates
MitraDarja/raptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
MitraDarja/recursion
MitraDarja/seqan
SeqAn's official repository.
MitraDarja/sharg-parser
THE argument parser for bio-c++ tools.
MitraDarja/squeakr
Squeakr: An Exact and Approximate k -mer Counting System
MitraDarja/structured-data
MitraDarja/training-day
MitraDarja/travis-yaml
parses, normalizes, validates and serializes your .travis.yml
MitraDarja/usage_plots
Scripts for generating plots about the usage of OpenMS
MitraDarja/www.seqan.de