/kana-special-features

Lists of special features for use in kana.

Primary LanguageRMIT LicenseMIT

Special feature blacklists for kana

This repository defines a set of special features that can be used in kana. The most obvious motivation is to identify mitochondrial genes for quality control, but we could also remove ribosomal proteins and immune repertoire gene fragments prior to downstream analysis.

The blacklists.R script will go through all available Ensembl releases on Bioconductor's AnnotationHub, pulling out "special" features for a bunch of different species. (Call submit.sh to handle each species in parallel.) It will then generate a set of files that are available via on the Releases page.