kanefos

kanefos's Stars

• KenneyNL/Adobe-Alternatives

  A list of alternatives for Adobe software

  6k8962253

• posit-dev/positron

  Positron, a next-generation data science IDE

  Language:TypeScript3k343.3k92

• tidymodels/infer

  An R package for tidyverse-friendly statistical inference

  Language:R7312727080

• extendr/extendr

  R extension library for rust designed to be familiar to R users.

  Language:Rust4441535645

• ewenme/ghibli

  Studio Ghibli colour palettes

  Language:R4237318

• stemangiola/tidyHeatmap

  Draw heatmap simply using a tidy data frame

  Language:R32675924

• MatthewBJane/ThemePark

  Fun ggplot themes for popular culture

  Language:R19761213

• BlakeRMills/MoMAColors

  Color Schemes based around artwork and the Museum of Modern Art.

  Language:R191226

• funkyheatmap/funkyheatmap

  Visualising data frames as funky heatmaps 📊

  Language:R16852410

• FrederickHuangLin/ANCOMBC

  Differential abundance (DA) and correlation analyses for microbial absolute abundance data

  Language:R112822029

• carmonalab/GeneNMF

  Methods to discover gene programs on single-cell data

  Language:R952204

• openvax/mhctools

  Python interface to running command-line and web-based MHC binding predictors

  Language:Python94148322

• snakemake-workflows/snakemake-workflow-template

  A template for standard compliant snakemake-workflows

  Language:Python902633

• doehm/eyedroppeR

  Pick colours from an image in R

  Language:R75231

• jbengler/tidyheatmaps

  Heatmaps from Tidy Data

  Language:R50283

• statbiophys/OLGA

  Compute generation probabilities of CDR3 amino acid and nucleotide sequences

  Language:Python4941617

• wukevin/tcr-bert

  Large language modeling applied to T-cell receptor (TCR) sequences.

  Language:Jupyter Notebook481118

• immunogenomics/cna

  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets.

  Language:Python473175

• mikelkou/fava

  Functional Associations using Variational Autoencoders

  Language:Jupyter Notebook38153

• AnneChao/SpadeR

  SpadeR provides simple R functions to compute various biodiversity indices and related (dis)similarity measures based on individual-based (abundance) data or sampling-unit-based (incidence) data taken from one or multiple communities/assemblages.

  Language:R2941510

• theislab/multimil

  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases

  Language:Python205583

• statbiophys/HLAGuessr

  Language:Jupyter Notebook17133

• wolfganghuber/t-test-normality-and-independence

  An R shiny app to explore the influence of the normality and independence assumptions (and their violation) on the validity (i.e. the type I error calibration) of the t-test

  Language:R13100

• ruppinlab/CSI-Microbes-analysis

  The code for running the analysis component of CSI-Microbe

  Language:Python12303

• yutanagano/sceptr

  Simple Contrastive Embedding of the Primary sequence of T cell Receptors

  Language:Python10411

• rbentham/HLAdivR

  A set of functions built into an R package for examining HLA diversity

  Language:R9200

• getzlab/10x-cd45-isoform-quantification

  Language:Jupyter Notebook8800

• RcwYuen/TCR-Cancer-Prediction

  This is the repository for the code used in my dissertation, for tidied code, please view https://github.com/RcwYuen/TCR-Embeddings

  Language:Jupyter Notebook21

• davenportlab/HLApm

  Personalised HLA mapping for scRNA and bulkRNA sequencing data

  Language:HTML10

• titaniumsg/find_tcreg

  Language:Python1