/libNeuroML

This package provides Python libNeuroML, for working with neuronal models specified in NeuroML

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

Introduction

This package provides Python libNeuroML, for working with neuronal models specified in NeuroML 2 (http://neuroml.org/neuromlv2).

For more about libNeuroML see:

Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson, libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience Frontiers in Neuroinformatics 2014, doi: 10.3389/fninf.2014.00038

PLEASE CITE THE PAPER ABOVE IF YOU USE libNeuroML!

Documentation is available at http://readthedocs.org/docs/libneuroml/en/latest/

For installation instructions, see http://readthedocs.org/docs/libneuroml/en/latest/install.html

Process

Most of the work happens in the development branch. That branch is kept up to date with the development branches for NeuroML 2 and related libraries. See https://neuroml.org/getneuroml for an overview of the various NeuroML libraries.

Note that pyNeuroML is also in active development with other NeuroML2 utilities besides parsing/modifying/writing which this package concentrates on.

Travis integration

libNeuroML is integrated with the the Travis Continuous Integration service.

Build Status

Changelog

version 0.2.18

  • Updated to use the final stable Schema for NeuroML v2beta4
  • Tested with Python 3

version 0.2.4

  • Updated to use the Schema for NeuroML v2beta4

version 0.2.2

  • Updated to use the Schema for NeuroML v2beta3
  • Ensures numpy & pytables are only required when using non-XML loaders/writers

version 0.2.0

  • Updated to use the Schema for NeuroML v2beta2

version 0.1.9

  • Minor release: Update to latest schema

version 0.1.8

  • Several Bug fixes and small enhamcements
  • Support for latest NeuroML schema (see change outline)
  • JSON serialization
  • MongoDB backend
  • HDF5 serialization
  • Improved installation process
  • All usage examples are now run on the Travis-CI continuous integration server to confirm that that they do not error.
  • Schema validation utility
  • Improved documentation and documentation new look

©️ Copyright 2017 by the libNeuroML team, see AUTHORS. :license: Modified BSD License, see LICENSE for details.