karJac
Single-cell multiomics analyses of glioma microenvironment. All of my scripts here are avaible under MIT license.
Nencki Institute of Experimental BiologyWarsaw
Pinned Repositories
CityOfHope
Analysis of immunotherapy effects on mouse GL261 glioblastoma model immunoenvironment.
customCodes
My custom codes
customScripts
scripts by me
CyTOF_NO
Analysis of CD45+ cells from tumor microenvironment of GBM. (CyTOF)
DMRTA2
Analysis of DMRTA2+ cells in human glioblastoma for MM. (scRNA)
immunoEnvOPUS
OPUS project: Effect of popular mutations in GBM on tumor microenvironment.
scMosPlot
simple mosaic plot for single cell data, with option to normalize to cell number per condition
SCpubr
Generate high quality, publication ready visualizations for single cell transcriptomics data.
seurat4installation
installation of seurat 4
spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
karJac's Repositories
karJac/CityOfHope
Analysis of immunotherapy effects on mouse GL261 glioblastoma model immunoenvironment.
karJac/customCodes
My custom codes
karJac/customScripts
scripts by me
karJac/CyTOF_NO
Analysis of CD45+ cells from tumor microenvironment of GBM. (CyTOF)
karJac/DMRTA2
Analysis of DMRTA2+ cells in human glioblastoma for MM. (scRNA)
karJac/immunoEnvOPUS
OPUS project: Effect of popular mutations in GBM on tumor microenvironment.
karJac/scMosPlot
simple mosaic plot for single cell data, with option to normalize to cell number per condition
karJac/SCpubr
Generate high quality, publication ready visualizations for single cell transcriptomics data.
karJac/seurat4installation
installation of seurat 4
karJac/spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
karJac/tilbrm
tilbrm_dkfz