karel-brinda/Phylign

Nothing is mapped on main branch

leoisl opened this issue · 1 comments

leoisl commented

Hello,

sorry for my absence! I am back and can work now on mof-search! I wanted to get updated values for benchmarks, but when testing the main branch with make test, it fails. The diff log is big, and I realised that nothing is mapped:

(base) leandro@leandro-ThinkPad-X1-Carbon-6th:~/git/mof-search$ xzcat output/reads_1___reads_2___reads_3___reads_4.sam_summary.xz 
==> intermediate/03_map/actinobacillus_pleuropneumoniae__01____reads_1___reads_2___reads_3___reads_4.sam.gz <==
(base) leandro@leandro-ThinkPad-X1-Carbon-6th:~/git/mof-search$ cat output/reads_1___reads_2___reads_3___reads_4.sam_summary.stats 
queries 40
cumul_length_bps        6000
matched_queries 0
aligned_queries 0
aligned_segments        0
distinct_genome_query_pairs     0
target_genomes  0
target_batches  0
nonalignments   0

Any idea why?