leoisl

Pinned Repositories

cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
Language:C++15 4 122
make_prg
Code to create a PRG from a Multiple Sequence Alignment file
Language:Python21 6 297
pandora
Pan-genome inference and genotyping with long noisy or short accurate reads
Language:C++109 10 22414
Phylign
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
Language:Python25 6 1684
amygda
Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre
Language:Python1 2 01
bacterial_assembly_pipeline
Language:Python8 5 50
dbgwas
Github (trivial) mirror for https://gitlab.com/leoisl/dbgwas
1 2 00
make_prg
Code to create a PRG from a Multiple Sequence Alignment file
Language:Python2 2 92
miniphy-cobs
Language:Python3 2 40
plasnet
Clustering, visualising and exploring plasmid networks
Language:JavaScript3 2 142

leoisl's Repositories

leoisl/bacterial_assembly_pipeline
Language:Python8 5 50
leoisl/miniphy-cobs
Language:Python3 2 40
leoisl/plasnet
Clustering, visualising and exploring plasmid networks
Language:JavaScript3 2 142
leoisl/make_prg
Code to create a PRG from a Multiple Sequence Alignment file
Language:Python2 2 92
leoisl/pandora_workflow
Language:Jupyter Notebook1 1 11
leoisl/pangenome_variations
Language:Python1 3 41
leoisl/paper_pandora2020_analyses
Language:Jupyter Notebook0 4 01
leoisl/average
Language:Python
leoisl/awesome-cpp
A curated list of awesome C++ (or C) frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff.
1 0
leoisl/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0
leoisl/cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
Language:C++1 0
leoisl/CppCoreGuidelines
The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++
Language:Python
leoisl/django-mwe
A minimal working example of an app in django
Language:TypeScript4 01
leoisl/django-mwe2
2 0
leoisl/grp_meeting
Language:Makefile
leoisl/grp_meeting_test
Language:Makefile1 0
leoisl/hello-mess-nf
A Nextflow pipeline to experiment with DSL2 + Zero Mess
leoisl/igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
Language:Python0 0
leoisl/mob_recon_snakemake
Language:Python1 0
leoisl/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow0 0
leoisl/mof-search
BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours
Language:Python0 0
leoisl/multi-package-containers
Testing building mulled containers for multi-requirement tools.
0 0
leoisl/pandora
Pan-genome inference and genotyping with long noisy or short accurate reads
Language:C++2
leoisl/pandora_paper_roc
Language:Jupyter Notebook1
leoisl/python_in_condaenv_in_snakemake_in_poetry_env
Language:Python1 1
leoisl/skills-github-pages
My clone repository
1 0
leoisl/test_disk_speed_in_cluster
Language:Shell1 0
leoisl/three.js
JavaScript 3D Library.
Language:JavaScript0 0
leoisl/threejs-example
Language:JavaScript1 0
leoisl/tree_building_from_pandora_VCF
Language:Shell1 0