BIOS9000
This repo contains the course materials for a 2 day class on assembly. This course is run on infrastructure provided by the University of Oslo.
Shedule
Day 1
- Group activity: intro assembly exercise
- Discussion assembly exercise
- Lecture: intro to assembly, principles and problems
- Group activity: de Bruijn graphs by hand
- Break
- Lecture: quick intro to assembly with velvet
- Class activity: a first velvet assembly
- Class activity: assembly statistics discussion
- Group activity: Starting Unicycler
Day 2
- Group activity: starting SPAdes and Flye assemblers
- Lecture: on SPAdes, Flye and Unicycler
- Class activity: evaluation without a reference
- Break
- Lecture: Comparing to a reference
- Class activity: comparing assemblies - velvet and SPAdes
- Group activity: comparing assemblies with quast