👨💻 Antti Karkman
🏛️ University of Helsinki
✉️ antti.karkman@helsinki.fi
Genome analysis module of the course "MMB-114 Exploratory microbial research - lab course" of the University of Helsinki.
After completing this module, you will be able to:
- Choose the most adequate platform for your genome sequencing experiment
- Investigate and judge the quality of sequencing data
- Make use of a variety of tools to:
- Process whole genome sequencing data
- Assemble and annotate whole genome sequencing data
- Predict metabolic pathways from assembled and annotated genomes
| Activity | ||
|---|---|---|
| Day 1: UNIX and CSC | Lecture slides | Exercises |
| Day 2: Read trimming | Lecture slides | Exercises |
| Day 3: Checkup | No activities | No activities |
| Day 4: Genome assembly | Lecture slides | Exercises |
| Day 5: Genome annotation | Lecture slides | Exercises |
| Day 6: Metabolic pathway analysis | Lecture slides | Exercises |